Nicknamed 'Happy Feet', the emperor penguin became the focus of international attention after washing up on a beach in the country during June.
It was initially feared he would not survive after he ate sand, believing it was snow.
Now fit and well, vets have given him the all clear to hitch a lift on a research ship back to the Antarctic
He leaves on Monday in his own specially-designed crate to keep him cold and comfortable.
The penguin has also been fitted with a GPS tracking device so the public can check he does not make another wrong turn.Research vessel Tangaroa sets sail from Wellington with the VIP guest on board, accompanied by a zoo vet. He will be released into the ocean four days later.
Dr Rob Murdoch, from the New Zealand's National Institute of Water and Atmospheric Research, the organisation operating the ship, said: "It is a fantastic coincidence that the Tangaroa's journey takes it to 53 degrees south, which is within the natural range of juvenile emperor penguins.
"They are often spotted on Campbell Island which lies at the same latitude."
Just before Happy Feet leaves, staff at Wellington Zoo are holding a farewell party for him. Guests are being invited to wear black and white in his honour.
Fans can track his progress at www.sirtrack.com and www.ourfarsouth.org.
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